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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33083780_33084273_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33083780 - 33084273
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATCTTTTATCT
Flanking Amino Acid:
GGSIRAQLRQCLQLPFLRSL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
73.8
0.53
1
69.4
40
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
61.9
0.45
1.6
78.08
38.2

Associated Gene:

Gene:
DDB2
Ensembl Gene ID:
ENSAPLG00000007909
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008218
33081343 - 33092953
11611