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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33084466_33087078_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33084466 - 33087078
Intron Length:
2613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CTAACCTTGATG
Flanking Amino Acid:
VLTKTCFIKGKGPGDSLGDI
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.7
0.51
1
62.7
47.3
Minor 5ss
38.3
-1.3
3
45.5
42.6
Minor BPS
60.4
0.18
1.5
59.83
42.3

Associated Gene:

Gene:
DDB2
Ensembl Gene ID:
ENSAPLG00000007909
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008218
33081343 - 33092953
11611