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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33087246_33088392_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33087246 - 33088392
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CAGCACTGATTT
Flanking Amino Acid:
PDCGHELHNVCCWYCSVDVS
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.2
43.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
81.8
0.72
0.7
74.4
30.9
Minor 5ss
26.4
-2.7
2.9
27.5
37.7
Minor BPS
42.3
-0.5
1.8
52.56
42.1

Associated Gene:

Gene:
DDB2
Ensembl Gene ID:
ENSAPLG00000007909
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008218
33081343 - 33092953
11611