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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33090056_33091116_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33090056 - 33091116
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGTGATTGACT
Flanking Amino Acid:
VLPHDKPVNAAYFSPTDGAK
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
72.7
0.51
0.8
64
31.1
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
50.1
0.08
2.1
71.95
45.2

Associated Gene:

Gene:
DDB2
Ensembl Gene ID:
ENSAPLG00000007909
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008218
33081343 - 33092953
11611