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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33091676_33091988_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33091676 - 33091988
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTTTCCATT
Flanking Amino Acid:
HDPNASGIISLNKFNPMGDT
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.1
42.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
87.6
0.85
0.7
85.2
28.1
Minor 5ss
34.6
-1.7
2.8
41
45.3
Minor BPS
48.9
-0
1.9
71.95
39.8

Associated Gene:

Gene:
DDB2
Ensembl Gene ID:
ENSAPLG00000007909
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008218
33081343 - 33092953
11611