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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33095050_33095137_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33095050 - 33095137
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
CTTCCAATGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
TTTCCTTCCAAT
Flanking Amino Acid:
RHPACPLQALGLSVSALNED
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
62.3
43.9
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
66.6
0.37
1
59
40.8
Minor 5ss
34.6
-1.7
3.1
40.8
45
Minor BPS
48.5
-0
2.1
75.04
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010090
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010510
33094818 - 33098917
4100