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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33132351_33132753_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33132351 - 33132753
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
AGTCTTTGAACC
Flanking Amino Acid:
AFNLQVATPGGKSVDFVDVN
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
67.2
0.39
0.9
60.8
40.8
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
56.1
0.17
1.4
63.74
35

Associated Gene:

Gene:
GATD1
Ensembl Gene ID:
ENSAPLG00000010378
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010817
33132222 - 33139347
7126