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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33132860_33133330_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33132860 - 33133330
Intron Length:
471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTCT
5'SS Class:
major
3'SS Sequence:
TCCTTCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCCTTCTTATTA
Flanking Amino Acid:
ANPAKLESIDGARYHALLIP
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
68.2
37.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
77
0.61
0.8
77.8
29.4
Minor 5ss
38.9
-1.3
3.4
53.4
45.7
Minor BPS
60
0.31
1.6
65.92
41.6

Associated Gene:

Gene:
GATD1
Ensembl Gene ID:
ENSAPLG00000010378
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010817
33132222 - 33139347
7126