About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33133439_33133850_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33133439 - 33133850
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TATGCTTTGATT
Flanking Amino Acid:
KILQHFSTENKPICAVGHGV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.1
31.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
91
0.92
0.6
85.6
29.2
Minor 5ss
33.9
-1.8
3.2
41.6
40.4
Minor BPS
67.5
0.63
1.3
79.26
37.5

Associated Gene:

Gene:
GATD1
Ensembl Gene ID:
ENSAPLG00000010378
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010817
33132222 - 33139347
7126