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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33138230_33138653_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33138230 - 33138653
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTTCTTTCATT
Flanking Amino Acid:
VQNLLMLCNVR*
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86
0.81
0.8
85.3
28.2
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
67.7
0.64
1.7
82.98
39.3

Associated Gene:

Gene:
GATD1
Ensembl Gene ID:
ENSAPLG00000010378
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010817
33132222 - 33139347
7126