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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33154936_33155577_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33154936 - 33155577
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TATTTGTTCACT
Flanking Amino Acid:
DAIKLETMLKERMFSAENGK
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
71.3
0.53
1
61.3
37
Major PPT
83.9
0.76
0.7
76.9
31.7
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
53
0.18
2.4
80.35
41.7

Associated Gene:

Gene:
TALDO1
Ensembl Gene ID:
ENSAPLG00000010471
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010921
33154903 - 33161953
7051