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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33155724_33156701_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33155724 - 33156701
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTTTTTGAATT
Flanking Amino Acid:
KLTPTLSVKDAQACDLEKIH
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
79.8
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
80
0.68
0.9
76
32.5
Minor 5ss
37.9
-1.4
3
47.1
42.6
Minor BPS
66.8
0.61
1.3
79.72
37

Associated Gene:

Gene:
TALDO1
Ensembl Gene ID:
ENSAPLG00000010471
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010921
33154903 - 33161953
7051