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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33156900_33157049_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33156900 - 33157049
Intron Length:
150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAAAA
Flanking Amino Acid:
KKTYEPSEDPGVKSVTKIYN
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.6
0.89
0.6
89.5
19.2
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
64.6
0.45
1.5
74.51
36.2

Associated Gene:

Gene:
TALDO1
Ensembl Gene ID:
ENSAPLG00000010471
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010921
33154903 - 33161953
7051