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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33158576_33159016_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33158576 - 33159016
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCCCCATAAAA
Flanking Amino Acid:
DAVAYGKKLGGSEDEQIQNA
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.8
0.65
0.8
77
37
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
52.5
0.08
1.8
63.19
42.6

Associated Gene:

Gene:
TALDO1
Ensembl Gene ID:
ENSAPLG00000010471
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010921
33154903 - 33161953
7051