About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33176800_33177826_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33176800 - 33177826
Intron Length:
1027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGTCTGTAATC
Flanking Amino Acid:
VHFLFGPLELIVNSCAGPEL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.7
41.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
64.3
0.32
1
55.7
43.8
Minor 5ss
41.6
-0.9
3.1
53.4
44.8
Minor BPS
60.9
0.32
2
73.46
38.5

Associated Gene:

Gene:
EPS8L2
Ensembl Gene ID:
ENSAPLG00000017050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017636
33176108 - 33185936
9829