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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33177902_33180401_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33177902 - 33180401
Intron Length:
2500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TTTCCTTTATCT
Flanking Amino Acid:
QKTKLAFNLLAKLRKHIQNP
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
67.8
37.5
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
86.6
0.82
0.7
85.5
29.1
Minor 5ss
32.4
-2
3.1
39.7
40.1
Minor BPS
72.7
0.79
1.5
89.39
35

Associated Gene:

Gene:
EPS8L2
Ensembl Gene ID:
ENSAPLG00000017050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017636
33176108 - 33185936
9829