About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33180491_33180850_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
33180491 - 33180850

Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACAGTGC

5'SS Class:
major

3'SS Sequence:
CTTTTTATAAAAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
CTTTTTATAAAA

Flanking Amino Acid:
GKKNKKKGPAEGVLTLRARP

Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
69.6
0.46
1.1
58.3
41.8

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
69.8
0.45
1.1
72.5
35.4

Minor 5ss
35.4
-1.7
3.5
50.3
46.3

Minor BPS
55.2
0.16
1.7
68.75
37.7

Associated Gene:

Gene:
EPS8L2

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

33176108 - 33185936
9829