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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33184828_33185713_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33184828 - 33185713
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCAGA
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTAGAT
U12 Branch Point Sequence:
CGTTGCCCAGCC
Flanking Amino Acid:
SIRLLDCESQEELEDFPLPT
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
60
46.4
Major BPS
64
0.35
1.2
60.7
45.9
Major PPT
87.5
0.84
0.7
79.8
32.2
Minor 5ss
43.2
-0.7
3
58.2
45.9
Minor BPS
39.7
-0.8
2.3
52.2
44.7

Associated Gene:

Gene:
EPS8L2
Ensembl Gene ID:
ENSAPLG00000017050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017636
33176108 - 33185936
9829