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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33185876_33185927_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
33185876 - 33185927
Intron Length:
52

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCACCAACA
5'SS Class:
weak_major
3'SS Sequence:
CTCCCACCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCCCTCCCACCT
Flanking Amino Acid:
MTQHLATFIMDKS
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.8
0.19
1.3
57.8
40.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.2
0.54
0.8
69.9
29.7
Minor 5ss
29.6
-2.3
4
40.9
39.4
Minor BPS
41.6
-0.5
2
57.59
45.1

Associated Gene:

Gene:
EPS8L2
Ensembl Gene ID:
ENSAPLG00000017050
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017636
33176108 - 33185936
9829