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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33231591_33232954_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33231591 - 33232954
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTCAT
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
GTTTCCTTCAAG
Flanking Amino Acid:
AILEALRLYLGSKGNLTEEE
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.6
41.3
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
74.6
0.55
1
72.4
38.1
Minor 5ss
41.5
-0.9
2.8
50
46.3
Minor BPS
61
0.2
2
69.63
43.2

Associated Gene:

Gene:
TMEM80
Ensembl Gene ID:
ENSAPLG00000031153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024302
33231385 - 33236950
5566