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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33233048_33233159_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33233048 - 33233159
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TGCTATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGGCTTATTT
Flanking Amino Acid:
LATLAMIFYKRQVFSYPDKF
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.3
73.2
39.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82
0.72
0.9
75.7
37.9
Minor 5ss
41.9
-0.9
2.8
51.9
38.5
Minor BPS
55.1
0.24
2.1
79.24
43.6

Associated Gene:

Gene:
TMEM80
Ensembl Gene ID:
ENSAPLG00000031153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024302
33231385 - 33236950
5566