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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33233277_33236928_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
33233277 - 33236928
Intron Length:
3652

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGCATAT
5'SS Class:
major
3'SS Sequence:
TCATTACTATGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATGAAAT
Flanking Amino Acid:
VLHPSRGEILNSSYQLS
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
59.5
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
50.8
0.02
1.7
63.7
41.7
Minor 5ss
33.4
-1.9
4.3
55.2
49
Minor BPS
55.3
0.24
1.8
77.97
37.4

Associated Gene:

Gene:
TMEM80
Ensembl Gene ID:
ENSAPLG00000031153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024302
33231385 - 33236950
5566