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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33240046_33240435_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33240046 - 33240435
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTCCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATGATTTAAAA
Flanking Amino Acid:
NAASISGHVLSGRTALQIGD
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
75.2
0.57
0.8
70
30.2
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
55.2
0.16
1.7
66.79
39.3

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625