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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33240566_33241453_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33240566 - 33241453
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGGC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TTTTTTTCAAAG
Flanking Amino Acid:
LKGPSAPLTPGPQSPPTPLT
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
59.3
38.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
79.1
0.66
1
81.5
27.8
Minor 5ss
36.2
-1.6
3.4
50.4
46.2
Minor BPS
59.2
0.15
1.7
68.37
39.3

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045