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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33242590_33242898_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33242590 - 33242898
Intron Length:
309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TGATACTGAATT
Flanking Amino Acid:
AGRPLQCLIHDGILNPHAAS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
77.8
32.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.2
0.63
0.9
74.4
33.9
Minor 5ss
42.7
-0.8
3.4
59.9
45
Minor BPS
60.5
0.41
1.6
76.17
39.8

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045