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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33242965_33244037_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33242965 - 33244037
Intron Length:
1073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
CAACCDDMTLSGPVRLFVPY
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.6
34.9
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
86.9
0.83
0.6
81.5
30.6
Minor 5ss
36.6
-1.5
2.9
46.4
44.2
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045