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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33246068_33246853_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33246068 - 33246853
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TATACAATGATT
Flanking Amino Acid:
SQGDVFTGATVQDTNVQQPC
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
78.7
35.3
Major BPS
84.6
0.86
1
74
41.2
Major PPT
86.2
0.82
0.7
81.2
30.8
Minor 5ss
35.3
-1.7
3.8
52.2
46
Minor BPS
48.5
-0
1.9
71.36
39.1

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045