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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33246983_33250596_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33246983 - 33250596
Intron Length:
3614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTATGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCGATTTTATTT
Flanking Amino Acid:
AALPTSHPKIVLTPIPALSV
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
82.3
31.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.8
0.65
0.9
77
36.1
Minor 5ss
58.3
0.28
2.3
72.3
40
Minor BPS
49.4
0.04
1.6
63.14
42.3

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042873
33238785 - 33262454
23670
ENSAPLT00000028000
33238563 - 33261607
23045
ENSAPLT00000025257
33237886 - 33255738
17853
ENSAPLT00000011712
33239983 - 33261607
21625