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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33250848_33259798_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33250848 - 33259798
Intron Length:
8951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCTCTCTGACG
Flanking Amino Acid:
KIQADVERKEQSCVNCGREA
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.8
0.76
0.8
79.2
32.7
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
58.6
0.13
1.8
67.08
41

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028000
33238563 - 33261607
23045