About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33250856_33255674_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33250856 - 33255674
Intron Length:
4819

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCCAGGGGA
5'SS Class:
major
3'SS Sequence:
GAAATCTGACAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TAAAGTTTAAAA
Flanking Amino Acid:
QADVERKEVIIVLIEIGLLL
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.3
64.2
36.7
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
46.7
-0.1
1.2
38.9
43.2
Minor 5ss
16.1
-3.9
3.8
24.7
37.2
Minor BPS
48.8
-0
1.9
59.59
39.7

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025257
33237886 - 33255738
17853