Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3325361_3327417_F

Intron Information:

Intron Rank:

129596

Intron Class:

major

Intron Phase:

Intron Coordinates:

3325361 - 3327417

Intron Length:

2057

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

CTCCATGATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAC

U12 Branch Point Sequence:

TTCTGTTTTACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.8

77.5

30.7

Major BPS

68.8

0.47

1.2

63.4

Major PPT

67.5

0.39

61.2

38.9

Minor 5ss

31.9

-2.1

3.3

40.3

40.2

Minor BPS

0.3

2.1

79.47

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019739

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048366

3325188 - 3341959

16772