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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33259889_33261502_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33259889 - 33261502
Intron Length:
1614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAGAT
5'SS Class:
major
3'SS Sequence:
TCTTCCCTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCTCTTCATG
Flanking Amino Acid:
NYCSTFCQRKDWKEHQHICG
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
70.1
33.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.1
0.72
0.7
76.9
25
Minor 5ss
37.5
-1.4
3.5
55.2
49
Minor BPS
58.5
0.12
1.8
68.07
40.1

Associated Gene:

Gene:
DEAF1
Ensembl Gene ID:
ENSAPLG00000011215
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028000
33238563 - 33261607
23045