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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33266360_33267124_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33266360 - 33267124
Intron Length:
765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTCTTTAATG
Flanking Amino Acid:
KAMRVLPVVVGAFLFCWTPF
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
31.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.7
0.44
1
65.3
36.2
Minor 5ss
35.5
-1.6
2.9
44.3
43.6
Minor BPS
69.9
0.49
1.4
66.31
42.6

Associated Gene:

Gene:
DRD4
Ensembl Gene ID:
ENSAPLG00000011878
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012359
33266157 - 33280512
14356