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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33296568_33297702_F

Intron Information:

Intron Rank:
148179
Intron Class:
major
Intron Phase:
Intron Coordinates:
33296568 - 33297702
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TTTCACTGCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.6
0.64
0.7
73.7
24.5
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
51.3
0.12
2.1
79.84
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029790
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036251
33296454 - 33300200
3747