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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33309539_33309807_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33309539 - 33309807
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATGAATA
Flanking Amino Acid:
SGDDPLDVWDRYIKWTEQTF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
73.5
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.6
0.58
0.8
67
38.9
Minor 5ss
48.9
-0.1
2.8
68.8
42.1
Minor BPS
55.6
0.17
1.7
68.84
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091