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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33311020_33311122_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33311020 - 33311122
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTGCTGACTT
Flanking Amino Acid:
EPLDKLQSHHRQFQTRVSRQ
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
79
0.72
1
69
38.9
Major PPT
89.5
0.89
0.7
88.7
27.5
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
53.6
0.19
2.1
80.5
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835