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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33311617_33313167_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33311617 - 33313167
Intron Length:
1551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
CTAACATTGACT
Flanking Amino Acid:
QSAGPWNSGRRPHSSANSGI
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.7
44.5
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
86.5
0.82
0.7
84.5
23.3
Minor 5ss
40.7
-1
2.9
49.5
46.5
Minor BPS
58.4
0.34
1.7
74.21
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835
ENSAPLT00000036594
33307912 - 33357431
49520