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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33313263_33314670_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33313263 - 33314670
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATCCAAGTAATA
Flanking Amino Acid:
YVEESSQQQVMTPCKIDPSI
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79.9
34.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
83.3
0.75
0.9
80.3
37.3
Minor 5ss
37.1
-1.5
3.2
54.8
42.5
Minor BPS
41.5
-0.6
2.2
53.37
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835