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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33314895_33315182_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
33314895 - 33315182
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTC
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AAATACATACTG
Flanking Amino Acid:
YRKKAKKKAEEEFQAIMQKK
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
74.9
36.3
Major BPS
66.1
0.4
1
73
31.5
Major PPT
85.2
0.79
0.6
85.4
21.9
Minor 5ss
65.8
0.53
2.2
76
40.1
Minor BPS
42.6
-0.6
2
46.15
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835