About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33323892_33324167_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33323892 - 33324167
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATAA
5'SS Class:
major
3'SS Sequence:
TATTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTCCAAAAAT
Flanking Amino Acid:
QLDAKGFVTKVYSQPVPWDF
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
73.9
32.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.6
0.73
0.7
78
30.3
Minor 5ss
42.8
-0.8
2.9
56
48.2
Minor BPS
55.4
0.25
2
79.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000026705
33307912 - 33356002
48091
ENSAPLT00000004402
33307912 - 33331322
23411
ENSAPLT00000040100
33306488 - 33331322
24835