Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33324330_33325014_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33324330 - 33325014

Intron Length:

685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTCAGTACA

5'SS Class:

major

3'SS Sequence:

TCCTTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

GCATGTTTATTC

Flanking Amino Acid:

HRDVNRFTLADLIRGCKSIA

Intron Amino Acid Position:

926

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.3

71.9

39.6

Major BPS

78.2

0.7

77.9

32.1

Major PPT

85.7

0.8

83.6

31.5

Minor 5ss

31.9

-2.1

2.5

36.6

39.8

Minor BPS

45.6

-0.3

1.9

51.08

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004271

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004402

33307912 - 33331322

23411

ENSAPLT00000040100

33306488 - 33331322

24835

ENSAPLT00000036594

33307912 - 33357431

49520

ENSAPLT00000035671

33306488 - 33331322

24835

ENSAPLT00000026705

33307912 - 33356002

48091