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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33326731_33326808_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33326731 - 33326808
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGGAT
5'SS Class:
major
3'SS Sequence:
TCCTATATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTTCCTATATCT
Flanking Amino Acid:
GYDKVTGALKTPHGQQLLAK
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
65.9
39.9
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
75.8
0.58
0.9
73.2
35.5
Minor 5ss
29.6
-2.3
3.8
46
49.3
Minor BPS
58
0.33
1.9
82.49
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004402
33307912 - 33331322
23411