About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33326857_33327220_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33326857 - 33327220
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTATGACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTATGACT
Flanking Amino Acid:
LLAKSSLPYQVDLVGIADIV
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
71
0.47
1
63.2
42.8
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
56.1
0.27
1.7
79.08
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040100
33306488 - 33331322
24835
ENSAPLT00000036594
33307912 - 33357431
49520
ENSAPLT00000035671
33306488 - 33331322
24835
ENSAPLT00000004402
33307912 - 33331322
23411