Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33327328_33331129_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33327328 - 33331129

Intron Length:

3802

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTCCT

5'SS Class:

major

3'SS Sequence:

TACTCTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAC

U12 Branch Point Sequence:

TTTCACTGAAAA

Flanking Amino Acid:

SIWKISQNISETVGGDFWHK

Intron Amino Acid Position:

1040

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

69.1

41.8

Major BPS

72.3

0.55

1.2

77.4

37.4

Major PPT

75.3

0.57

0.9

73.3

36.8

Minor 5ss

38.1

-1.3

48.4

41.1

Minor BPS

56.7

0.21

1.8

72.94

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004271

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040100

33306488 - 33331322

24835

ENSAPLT00000035671

33306488 - 33331322

24835

ENSAPLT00000004402

33307912 - 33331322

23411