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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33327328_33355861_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33327328 - 33355861
Intron Length:
28534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTCCCCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGTGACTGAGCT
Flanking Amino Acid:
SIWKISQNISEDQKEETVRR
Intron Amino Acid Position:
1066

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
69.1
41.8
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
71.5
0.48
0.7
66.2
22.8
Minor 5ss
38.1
-1.3
3
48.4
41.1
Minor BPS
48.3
-0
2
71.09
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004271
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036594
33307912 - 33357431
49520