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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33356187_33356501_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33356187 - 33356501
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTCC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTCGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
GGTCATACAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
40.1
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
70.3
0.46
1.7
77.8
36.7
Minor 5ss
44.7
-0.6
2.8
52.1
44.7
Minor BPS
42.2
-0.5
1.8
57.73
38.5

Associated Gene:

Gene:
PAK6
Ensembl Gene ID:
ENSAPLG00000003937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004057
33355862 - 33383221
27360