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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33360065_33367329_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33360065 - 33367329
Intron Length:
7265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CCATCTCTGATT
Flanking Amino Acid:
EEDSYIKCLKGTMFRKKKKK
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
72.6
0.51
1
70
40
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
49.5
0.04
1.7
63.66
41.5

Associated Gene:

Gene:
PAK6
Ensembl Gene ID:
ENSAPLG00000003937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004057
33355862 - 33383221
27360