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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33376264_33376540_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33376264 - 33376540
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
TGTGTTTTTACA
Flanking Amino Acid:
QQRRELLFNEVVIMRDYQHV
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
85.7
0.8
0.8
79.9
37.7
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
54.4
0.13
1.7
66.95
39.5

Associated Gene:

Gene:
PAK6
Ensembl Gene ID:
ENSAPLG00000003937
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039158
33355862 - 33383221
27360
ENSAPLT00000004057
33355862 - 33383221
27360