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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33405207_33406223_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33405207 - 33406223
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATGC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCGAT
U12 Branch Point Sequence:
TATTCGATAATC
Flanking Amino Acid:
VKDYVPDAWADLTIALSNPI
Intron Amino Acid Position:
781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.7
40.5
Major BPS
64.9
0.37
1.3
64.2
43
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
37
-1.5
3.3
50.9
45.6
Minor BPS
53.7
0.1
2.3
72.57
38.5

Associated Gene:

Gene:
PLCB2
Ensembl Gene ID:
ENSAPLG00000002574
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002672
33393491 - 33439123
45633