Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33406706_33407803_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33406706 - 33407803

Intron Length:

1098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTATCA

5'SS Class:

major

3'SS Sequence:

TTGTTTTCCTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCCTTAC

U12 Branch Point Sequence:

GTTGCCTTACTC

Flanking Amino Acid:

WKEEPFVFEKIMMPELASLK

Intron Amino Acid Position:

713

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

64.2

36.6

Major BPS

51.2

0.03

1.2

45.3

39.5

Major PPT

81.3

0.71

0.7

81.5

30.5

Minor 5ss

36.9

-1.5

3.2

48.6

Minor BPS

61.6

0.34

1.7

70.68

41.2

Associated Gene:

Gene:

PLCB2

Ensembl Gene ID:

ENSAPLG00000002574

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002672

33393491 - 33439123

45633